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applied maths-bionumerics wgmlst  (Applied Maths)

 
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    Applied Maths applied maths-bionumerics wgmlst
    Applied Maths Bionumerics Wgmlst, supplied by Applied Maths, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/applied+maths-bionumerics+wgmlst/applied+maths+bionumerics+wgmlst+scheme/pm39708273-78-27-25
    Average 90 stars, based on 1 article reviews
    applied maths-bionumerics wgmlst - by Bioz Stars, 2026-10
    90/100 stars

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    Article Title: Comparison of whole genome sequencing typing tools for the typing of Belgian Legionella pneumophila outbreaks isolates.
    Article Snippet: From the two commercially available data analysis tools the following schemes were used: “Ridom SeqSphere + ” cgMLST (v.5.1.1) (input data: SPADES preassembled WGS data), “Applied Maths-Bionumerics” (wgMLST) (v.8.1) (input data: FASTQ files). cgMLST and wgMLST are both based on the publication of Moran Gilad et al. [28].



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    Minimum spanning tree generated by cgMLST ridom seqsphere+ Legionella pneumophila scheme based on allelic profiles of 1412 genes present in all 78 analysed genomes. Circles correspond to the sequenced strains. Inside the circles, the strains are labelled by their ST. The number of allelic differences are indicated beside the branches. Strains with no allelic differences are classified in one circle. Strains classified in the same cluster are connected by a coloured background. For ST1 strains: Based on this MST, it could be shown that the ST1 environmental strain isolated from the hospital in 2011 was not the source of contamination of the patient hospitalised at that period (LEG759/LEG563)

    Journal: European Journal of Clinical Microbiology & Infectious Diseases

    Article Title: Comparison of whole genome sequencing typing tools for the typing of Belgian Legionella pneumophila outbreaks isolates

    doi: 10.1007/s10096-024-05013-4

    Figure Lengend Snippet: Minimum spanning tree generated by cgMLST ridom seqsphere+ Legionella pneumophila scheme based on allelic profiles of 1412 genes present in all 78 analysed genomes. Circles correspond to the sequenced strains. Inside the circles, the strains are labelled by their ST. The number of allelic differences are indicated beside the branches. Strains with no allelic differences are classified in one circle. Strains classified in the same cluster are connected by a coloured background. For ST1 strains: Based on this MST, it could be shown that the ST1 environmental strain isolated from the hospital in 2011 was not the source of contamination of the patient hospitalised at that period (LEG759/LEG563)

    Article Snippet: Fig. 2 Minimum spanning tree generated by wgMLST Applied Maths, Bionumerics Legionella pneumophila scheme based on allelic profiles of all 78 analysed genomes.

    Techniques: Generated, Isolation

    Minimum spanning tree generated by wgMLST Applied Maths, Bionumerics Legionella pneumophila scheme based on allelic profiles of all 78 analysed genomes. Circles correspond to the sequenced strains. Inside the circles, the strains are labelled by their strain ST. The number of allelic differences are indicated beside the branches. Strains with no allelic differences are classified in one circle. Strains classified in the same cluster are grouped in circles with coloured background

    Journal: European Journal of Clinical Microbiology & Infectious Diseases

    Article Title: Comparison of whole genome sequencing typing tools for the typing of Belgian Legionella pneumophila outbreaks isolates

    doi: 10.1007/s10096-024-05013-4

    Figure Lengend Snippet: Minimum spanning tree generated by wgMLST Applied Maths, Bionumerics Legionella pneumophila scheme based on allelic profiles of all 78 analysed genomes. Circles correspond to the sequenced strains. Inside the circles, the strains are labelled by their strain ST. The number of allelic differences are indicated beside the branches. Strains with no allelic differences are classified in one circle. Strains classified in the same cluster are grouped in circles with coloured background

    Article Snippet: Fig. 2 Minimum spanning tree generated by wgMLST Applied Maths, Bionumerics Legionella pneumophila scheme based on allelic profiles of all 78 analysed genomes.

    Techniques: Generated

    MST of the 50 loci cgMLST for the 78 genomes. Minimum spanning tree generated by the 50 loci cgMLST Legionella pneumophila scheme based on allelic profiles of all 78 analysed genomes. Circles correspond to the sequenced strains. The scores beside the branches correspond to the normalized dissimilarity. Strains with no allelic differences are classified in one circle

    Journal: European Journal of Clinical Microbiology & Infectious Diseases

    Article Title: Comparison of whole genome sequencing typing tools for the typing of Belgian Legionella pneumophila outbreaks isolates

    doi: 10.1007/s10096-024-05013-4

    Figure Lengend Snippet: MST of the 50 loci cgMLST for the 78 genomes. Minimum spanning tree generated by the 50 loci cgMLST Legionella pneumophila scheme based on allelic profiles of all 78 analysed genomes. Circles correspond to the sequenced strains. The scores beside the branches correspond to the normalized dissimilarity. Strains with no allelic differences are classified in one circle

    Article Snippet: Fig. 2 Minimum spanning tree generated by wgMLST Applied Maths, Bionumerics Legionella pneumophila scheme based on allelic profiles of all 78 analysed genomes.

    Techniques: Generated